There are a lot of genome information for you to browse, and several tools to search genes, expression etc. More details and introduction of this site are available at "About CGRD" page. Meanwhile, the Tutorials of how to use it are on "Tutorials" page. All pages were tested on Chrome browser(Version 41.0), Firefox browser(Version 37) and Safari browser(Version 7.1). The CGRD is not supported well in low version IE browser. You can try above browsers when CGRD does not work well in your own browser.

Alignment Overview

As the basic function of one genome database, the CGRD also provides two ways for you to query your own sequnece with the available cotton genome sequence database. You can use the BLAST program with proper options to obtain the identify percentage, positive percentage and other information of the alignment between your sequence with the target database. The alignments can be displayed in graphics mode, the transparency of segement color in graph is equal to the identify percentage. Another powerful program is the BLAT, it is useful to align transcript sequence to the genome sequnece. Meanwhile, the graph is helpful for you to understand the alignment(while the color is random).

  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01
  • image01